SubtiBank SubtiBank
yopO [2019-08-16 09:56:53]
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yopO [2019-08-16 09:56:53]

similar to transcription regulator (Xre family)
locus
BSU_20820
pI
4.29
mw
7.81 kDa
protein length
70 aa Sequence Blast
gene length
213 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

    • Gene

    Coordinates
    2,207,748 → 2,207,960

    The protein

    Protein family

  • [SW|Xre family]

    • Expression and Regulation

    Operons

    genes
    [gene|8B15C7311E9791DC1FF29FF1A46ECC70E93FE2F4|yopM]-[gene|01BE35FB190DDC77BE19C013A8E0D980B132CBE1|yopN]-[gene|E1B90896149DBA399174478D412DCDC242AB1834|yopO]-[gene|30D16B0061BBE33B6B53F219A6654A40F2185C53|yopP]-[gene|25F9A95D40FD5FA1114A1938D6B0DE2368B8689E|yopQ]-[gene|7F82DED7C941BC501B6F810BF6541780AB87EDDD|yopR]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • BKE20820 (Δ[gene|E1B90896149DBA399174478D412DCDC242AB1834|yopO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE20820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAACCTCCTATTTTT, downstream forward: _UP4_TTAGATGAGAAAGGAGGAGA
  • BKK20820 (Δ[gene|E1B90896149DBA399174478D412DCDC242AB1834|yopO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK20820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAACCTCCTATTTTT, downstream forward: _UP4_TTAGATGAGAAAGGAGGAGA

    • References

  • 23504016